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For the ATP guys: Unless you are going to a doctor that knows a little aviation medicine you should be your own best advocate especially if you are seeking treatment for chronic or relapsing conditions. For example, if you are prone to migraines look for a preventative medication like a beta blocker and use the Imitrex only for break through headaches.
Here is a good website that lists most common medications. Some of the categories are a little silly, but overall this is pretty comprehensive. Load this to your smartphone or tablet and be quick to take it out.
http://www.leftseat.com/medcat1.htm